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Interpreting cis-regulatory mechanisms from genomic deep neural networks using surrogate models
bioRxiv, 2023
Evan Seitz, David McCandlish, Justin Kinney, Peter Koo
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Interpreting cis-regulatory mechanisms from genomic deep neural networks using surrogate models
Beyond ManifoldEM: Geometric relationships between manifold embeddings of a continuum of 3D molecular structures and their 2D projections
RSC: Digital Discovery, 2023
Evan Seitz, Joachim Frank, Peter Schwander
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Beyond ManifoldEM: Geometric relationships between manifold embeddings of a continuum of 3D molecular structures and their 2D projections
A glycan gate controls opening of the SARS-CoV-2 spike protein
Nature Chemistry, 2021
Terra Sztain, Surl-Hee Ahn, Anthony Bogetti, Lorenzo Casalino, Jory Goldsmith, Evan Seitz, Ryan McCool, Fiona Kearns, Francisco Acosta-Reyes, Suvrajit Maji, Ghoncheh Mashayekhi, Andrew McCammon, Abbas Ourmazd, Joachim Frank, Jason McLellan, Lillian Chong, Rommie Amaro
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A glycan gate controls opening of the SARS-CoV-2 spike protein
POLARIS: Path of least action analysis on energy landscapes
ACS: Journal of Chemical Information and Modeling, 2020
Evan Seitz, Joachim Frank
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POLARIS: Path of least action analysis on energy landscapes